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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.4.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KF.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.61SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.61SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.47SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.251SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.251SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.256SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.256SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.22 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.22 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.128SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.128SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.405SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.405SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.296SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.296SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.412SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.412SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AC.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.27SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.421SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.421SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.364SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.364SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.82SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.82SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.70SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.70SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.559SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.559SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.406SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used