Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
P.1.8 (Gamma)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.39.3 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.39.3 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-463.749South Korea
B.1.1.55EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.55EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.149EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.149EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.300EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.300EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.179EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.179EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
C.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
C.25EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.25EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.125EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.125EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
G.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
G.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.438EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.438EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.35EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.35EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.178EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.178EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBJ.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XBJ.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CP.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
CP.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GJ.1.2.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
GJ.1.2.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CK.1.1.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
CK.1.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.56.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.2.56.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.7.21EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BF.7.21EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.185EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.185EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.258.9EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.258.9EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.329EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.329EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.229EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.229EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.342EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.342EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.90EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.90EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BN.1.2.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used