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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AA.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.133EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.133EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.18EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.18EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.466EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.466EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.489EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.489EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.363EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.363EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.379EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.379EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.78EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.78EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.16EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.16EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.231EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.231EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.49EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.49EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.67EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.67EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.123EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.123EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.143EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.143EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.29EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.29EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.48EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XBB.1.48EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.46.6.1 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.46.6.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.112.1 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.112.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.360EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.360EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.49EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.49EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.347EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.347EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.195EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.195EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.321EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.321EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.505EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
B.1.505EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.74EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-3870.9South Korea
B.1.1.74EWon-ECACACAATCGATGCGCAGTA20502636526346R-463.749South Korea
B.1.406EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used