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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.253EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.305EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.305EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AA.6EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AA.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.241EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.241EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.33EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.33EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.326EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.326EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.255EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.255EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.303EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.303EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AA.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AA.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.173EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.173EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.213EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.213EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.12EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.12EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.341EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.341EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.89EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.89EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.23EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.36.23EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.30EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.30EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.10EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.10EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.9EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.9EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.4.10 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.4.10 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.47EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.47EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.16EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.36.16EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.41 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.41 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.76EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.76EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.301EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.301EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.36.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.269EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used