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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.230EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.535EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.535EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
A.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-20208.4South Korea
A.24EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
A.24EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.564.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.564.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.345EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.345EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.53EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.53EWon-ECACACAATCGATGCGCAGTA20502636526346R-463.749South Korea
B.1.1.450EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.450EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.334EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.334EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.438.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.438.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.290EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.290EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.341EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.341EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.161EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.161EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.69 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.69 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.46EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.46EWon-ECACACAATCGATGCGCAGTA20502636526346R-13011.1South Korea
B.26EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.26EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.77EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.77EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.34EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.34EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.248EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.248EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.32EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.32EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AA.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AA.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.160.13EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.160.13EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.47EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.47EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.182EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.182EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.218EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.218EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.12.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used