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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.281NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AE.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AE.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.230NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.230NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.535NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.535NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.442NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.442NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.75NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.75NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.51NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.51NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.106NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.106NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
D.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
D.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.593NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.593NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.98NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.98NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.566NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.566NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.480NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.480NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.579NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.579NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
N.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
N.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.515NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.515NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
B.1.258.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258.23NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
B.1.370NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.370NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.118NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.118NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.137NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.137NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.309NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.309NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.546NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.546NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.194NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.194NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21584South Korea
B.1.429.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.429.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.1.9 (Gamma)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used