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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.357NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.357NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.589NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.589NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.335NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.335NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.169NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.169NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.43NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.42NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.42NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AE.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AE.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AE.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AE.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
N.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
N.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.36NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.407NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.407NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.20NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.423NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.423NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19749.2South Korea
A.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17727.2South Korea
A.24NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.564.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.564.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.345NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.345NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.53NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.53NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.450NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.450NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.334NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.334NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.438.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.438.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.290NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.290NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.341NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.341NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.161NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.161NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.69 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.69 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.46NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.281NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used