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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.506NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.6.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.6.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.438.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.438.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.27NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.267NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-211.894South Korea
B.1.267NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
B.1.165NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.165NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.554NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.554NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.243.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.243.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.2.5.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.2.5.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.450NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.450NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.336NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.336NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.400.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.400.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.537NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-3484.59South Korea
B.1.537NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
B.1.548NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.548NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
AY.24.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.24.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.188NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.188NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.39NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1480.18South Korea
B.50NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.50NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
B.1.494NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.494NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.167NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.167NWon-NGTTGCGACTACGTGATGAGG20552884928830R-941.915South Korea
B.1.485NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.485NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.119NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.119NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.276NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.276NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.111NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.111NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used