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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.12.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KP.2.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LQ.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LQ.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LY.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LY.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MD.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MD.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MK.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MK.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LZ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LZ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FD.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HT.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HT.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.90NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.90NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.18.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.18.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.88NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.88NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.48NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.48NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.31NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HZ.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used