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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.115NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.115NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.112NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.112NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.123NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.123NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.143NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.143NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.48NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.48NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.46.6.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.46.6.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.67NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.190NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.190NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.120NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.120NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AM.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AM.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AA.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AA.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.249NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.249NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.7.4.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.47NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.47NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
ED.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ED.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.24NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17028.5South Korea
BF.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.6.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.6.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.41NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used