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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.179NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.8.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.8.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.75.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.75.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.35NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.35NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CY.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CY.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FR.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FR.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.483NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.483NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.181NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.181NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.113NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.113NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.594NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.594NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.328NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.328NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.283NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.283NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.96NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.96NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
L.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
L.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.310NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.310NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CQ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CQ.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.24NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.43NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.38.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-19060.5South Korea
BF.38.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.351.3 (Beta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used