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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.197NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.491NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.491NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EV.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21359South Korea
P.1.8 (Gamma)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
P.1.8 (Gamma)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.39.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.39.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.95NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.95NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.531NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.531NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.45NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.45NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.200NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.200NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.299NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.299NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.125NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.125NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
G.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
G.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.438NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.438NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.35NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.35NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.178NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.178NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBJ.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBJ.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CP.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CP.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.1.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.1.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CK.1.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.56.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.56.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.55NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.55NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.149NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.149NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.300NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.300NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.179NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used