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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.236NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.33NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XQNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XQNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.59NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.59NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.252NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.252NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.223NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.223NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.640.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.640.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.11 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.11 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.428NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.428NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBMNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBMNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.34NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CB.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BR.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BR.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CL.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CL.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.26.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.26.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EJ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.1.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.123.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used