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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.35NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.35NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FK.1.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FK.1.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DR.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DR.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.219NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.219NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
N.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
N.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DJ.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DJ.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBC.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BW.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BW.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.10.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.10.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.366NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.366NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.441NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.441NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.416NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.416NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.63NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.63NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.263NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.263NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.135NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-19375South Korea
B.1.1.135NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.465NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.465NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.33NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.2.5 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.2.5 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XFNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XFNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
S.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
S.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.221.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used