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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.590NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.590NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.116NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.116NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.496NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.496NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.438.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.438.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.49 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.49 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.507NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.507NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.495NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.495NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.294NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.294NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.453NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.453NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.44NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.44NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.350NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.350NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21584South Korea
B.1.304NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.304NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.205NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.205NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.177NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.177NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.301NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.301NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.308NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.308NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.210NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.210NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.325NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.325NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.19.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.19.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.100NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.100NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.43.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.43.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EU.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.3.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used