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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.406NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.69NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.69NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.22 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.22 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.128NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.128NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
B.1.36.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.33NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.405NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.405NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.296NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.296NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.256NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.256NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.26NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.26NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.77NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.77NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.34NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.248NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.248NWon-NGTTGCGACTACGTGATGAGG20552884928830R-21305.4South Korea
B.32NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GZ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GZ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FT.3.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FT.3.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.4.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.4.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JZ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JZ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HS.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.73NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.73NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FE.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FE.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HA.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HA.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GM.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GM.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FT.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FT.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used