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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.372NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.425NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.425NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
EG.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBUNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBUNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.351.5 (Beta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.351.5 (Beta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FZ.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FZ.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.9.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.9.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.15.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.15.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.59 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.59 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBRNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBRNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DJ.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DJ.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GY.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GY.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBF.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAY.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAY.1.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.38NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.38NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CT.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EP.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EP.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CL.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CL.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBF.8.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.8.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAUNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAUNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FT.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used