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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.301NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.269NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.269NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.234NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.234NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.235NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.235NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.65NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.65NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.45NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.45NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.165NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.165NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.258.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.41 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.41 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.71NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.71NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AS.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.142NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.142NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.166NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.166NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.11 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.11 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Z.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Z.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
V.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
V.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.22NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.282NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.282NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.131NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.131NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.274NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.274NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.10 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.10 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.47NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used