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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.46.5 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
LV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LV.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.23NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GE.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GE.1.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.2.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.2.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JC.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JC.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.617.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.617.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.109 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.109 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.2.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.2.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.2.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.2.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.9.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.9.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.55NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.55NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.39NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.39NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.64NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.64NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.8 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.8 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.7 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.7 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KE.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KE.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.8.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.8.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.56NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.56NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.1.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDTNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used