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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XDD.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KR.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KR.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
MD.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MD.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.64.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.64.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDQ.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDQ.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
JN.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.18NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.2.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DV.7.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.7.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.23NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GN.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GN.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JH.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JH.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCZNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCZNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.40NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.6.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.6.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GY.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GY.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCWNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCWNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.2.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.2.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JC.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JC.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.41.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.41.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.70NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used