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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
GJ.1.2.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HW.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HW.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HN.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GE.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GE.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCHNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCHNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JF.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JF.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GW.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GW.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
JG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JG.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.1.2.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.2.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
FL.33.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.33.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.4.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.4.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCTNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCTNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.86.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.86.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDD.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDD.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HN.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.24.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.24.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.8.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.8.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GE.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GE.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.47NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used