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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.58NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.459NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.459NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.117NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.117NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.381NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.381NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.237NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.237NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.382NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.382NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.395NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.395NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCRNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCRNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.86NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.86NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.1.2.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.2.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GE.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GE.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HN.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HN.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JD.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.1.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20075South Korea
JR.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JR.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GJ.1.2.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.2.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-22305.6South Korea
XDA.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDA.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.58.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.58.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.5.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.4.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.13.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.20.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.20.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-20999.4South Korea
HK.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DV.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used