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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.451NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.8.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.8.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CA.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CA.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.61NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.61NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
ED.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ED.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BU.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BU.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBENWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBENWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.1.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.1.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.3.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CP.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CP.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EF.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.32NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BW.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BW.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CK.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCANWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCANWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.50NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.50NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.54NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.54NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GN.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GN.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.77 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.77 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.53 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.53 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used