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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.214.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
B.1.588NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.588NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.541NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.541NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19749.2South Korea
B.1.36.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.24NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.25NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.189NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.189NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.563NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.563NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.34NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.5.3 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.5.3 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BB.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BB.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.86 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.86 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.7 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.7 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.12 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.12 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.7.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.7.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.210NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.210NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.567NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.567NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.23NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.23NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.54NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.54NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.164NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.164NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KY.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KY.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.392NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.392NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.377NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.377NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.111NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used