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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
JG.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBBNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBBNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.53NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.53NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.60NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.60NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.6.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.6.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.28NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
P.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
P.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.29NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.11.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.11.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KC.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FY.5.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.5.5.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HK.3.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.3.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDDNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDDNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.61NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.61NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17723.5South Korea
XBB.1.16.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JN.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.86NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.86NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.41.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used