Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BF.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.3.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.38.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.38.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BT.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.55SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BS.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.36SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.1.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BM.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.5.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.5.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HC.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HC.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.93 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.93 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.31.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.31.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GW.5.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GW.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.23.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.23.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.64SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.64SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.68SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.68SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.65 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used