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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.134SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CZ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BY.1.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BY.1.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.1.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BM.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.2.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BM.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.13.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.13.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CK.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CK.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBC.1.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.11.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.11.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.208SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.208SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.197SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.197SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.491SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.491SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EV.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.8 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.8 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.3 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-11836.9South Korea
AY.39.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.95SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.95SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.26SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.531SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.531SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.45SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.200SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.200SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.299SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.299SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-20316.5South Korea
B.1.1.125SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.125SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
G.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
G.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.438SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used