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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BF.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FW.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FW.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.366SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.366SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.441SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.441SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.416SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.416SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.63SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.63SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.263SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.263SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.135SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.135SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.2.5 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.2.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XFSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XFSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
S.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
S.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.221.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.168SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.168SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.39SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.57SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.57SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AH.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AH.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.289SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.289SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.365SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.365SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.122.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.79 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.79 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AQ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.1.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18441.9South Korea
AY.120.2.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used