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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.330SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.205SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.205SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FP.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
FP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.443SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.443SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.595.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.595.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.315SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.315SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.516SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.516SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.354SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.354SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.162SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.162SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.426SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.426SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.402SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.402SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.116SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.116SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.496SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.496SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.438.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.438.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.49 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.49 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.507SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.507SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.495SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.495SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.294SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.294SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.453SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.453SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.44SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.44SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.350SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.350SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.304SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.304SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.177SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.177SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.301SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used