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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.582SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.580SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.580SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.306SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.306SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.280SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.280SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.329SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.329SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FU.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FU.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-18758.6South Korea
XBB.1.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.3.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.3.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.57SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.57SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.14.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.14.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DY.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DY.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.14.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.14.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.14.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.14.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.3.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.59SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.59SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.24.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.24.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.17.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.17.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.63SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.63SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HL.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HL.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.42.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used