Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.124 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.124 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.6 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.46.6 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.3 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.43.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.119.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.119.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.25.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.25.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.6 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.122.6 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.4.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.9.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.9.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.69SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.69SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.60SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.60SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.48SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JQ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.10.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BZ.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BZ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.10.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.44SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.44SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used