Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.318SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.335SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.335SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.169SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.169SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.42SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AE.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AE.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AE.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AE.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.36SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.407SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.407SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.20SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.423SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.423SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.564.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.564.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.345SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.345SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.53SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.450SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.450SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.334SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.334SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.589SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.589SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.438.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.438.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.290SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.290SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.341SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.341SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.161SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.161SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.69 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.69 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.46SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.46SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.281SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.281SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AE.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used