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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.557SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.119SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.119SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.160SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.160SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
D.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
D.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.447SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.447SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.77SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.77SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AE.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AE.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.504SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.504SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AE.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AE.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.201SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.201SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.221SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.221SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.182SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.182SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.430SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.430SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.331SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.331SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.112.3 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.112.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.37SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.110.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.110.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.180SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.180SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.155SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.155SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.92SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.92SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.145SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.145SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.120SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.120SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.417SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.417SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AM.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AM.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.20SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used