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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.243.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.157SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.157SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.176SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.176SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.3.4 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.3.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.391SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.1.391SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.393SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.393SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.432SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.432SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.632SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.632SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.72SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.72SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.108SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.108SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.332SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.332SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.42.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.42.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.348SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.348SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.515SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.515SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.287SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.287SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.431SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.431SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.170SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.170SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.410SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.410SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.411SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.411SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.109SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.109SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.361SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.361SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.557SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used