Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.579SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.11 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.11 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.258.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.370SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.370SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.118SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.118SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.137SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.137SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.309SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.309SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.546SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.546SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.194SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.194SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.429.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.429.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.9 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.9 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.25.1.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.25.1.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.203SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.203SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.388SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.388SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.48SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.112SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.112SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.274SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
B.1.274SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.515SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.515SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.428.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.428.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AJ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AJ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.459SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.459SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.1.160.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.415.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.415.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.243.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used