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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.269SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.234SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.234SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Z.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Z.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.235SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.235SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.65SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.65SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.45SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
B.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.165SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.165SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.71SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.71SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AS.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.142SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.142SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.166SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.166SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.11 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-2729.83South Korea
AY.4.11 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
V.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
V.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.282SWon-SCTACATGCACCAGCAACTGT20502311423133F-19106.5South Korea
B.1.282SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.131SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.131SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.274SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.274SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.10 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-10601.4South Korea
AY.4.10 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.47SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.41 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used