Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.389SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AZ.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AZ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.270SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.270SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.227SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.227SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
U.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
U.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.28SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AZ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.436SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.436SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.558SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.558SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.518SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.518SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.368SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.368SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.404SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.404SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.214SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.214SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.304SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.304SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.214.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.214.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.577SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.577SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.639SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.639SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.5.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.2.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.55SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.51SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.51SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.308SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.308SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.138SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.138SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.379SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.379SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.240SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.240SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.306SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.306SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.328SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used