Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BQ.1.1.63SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DU.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.53SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-17500.9South Korea
BF.7.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.15SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.619SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.619SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.36.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.36.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.36.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.36.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.23.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.23.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.316SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.316SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.585SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.585SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.351SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.351SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.243SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.243SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
R.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
R.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-20316.5South Korea
B.1.1.39SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.561SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.561SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.605SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.605SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.596SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.596SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
W.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.543SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.543SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.139SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.139SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.31SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used