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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.175NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.6.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.6.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.483NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.483NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.181NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.181NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.113NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.113NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.594NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.594NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.328NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.328NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.185NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.185NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.258.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.258.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.329NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.329NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.229NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.229NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.342NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.342NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.90NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.90NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.2.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CQ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CQ.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CH.1.1.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.24NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.43NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.43NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.38.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-19060.5South Korea
BF.38.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.187NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.187NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
D.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
D.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AE.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AE.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.110.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.110.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.342NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.342NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.500NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.500NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.110NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used