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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.36NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HZ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HZ.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.19.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.19.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.100NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.100NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.16.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.43.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.43.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EU.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EP.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EP.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.17.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.17.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EG.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.7.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.7.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.10.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.10.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JL.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.571NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.571NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.55 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.55 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAMNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAMNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.239NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.239NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.574NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.574NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.13.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.13.3.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GW.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GW.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.424NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.424NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.64NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.64NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AH.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AH.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.31.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17028.5South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used