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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BQ.1.1.58NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.631NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.631NWon-NGTTGCGACTACGTGATGAGG20552884928830R-18062.4South Korea
B.1.627NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.627NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.519NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.519NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.514NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.514NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GT.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.87NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.87NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XAPNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XAPNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.1.4.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.1.4.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FT.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FT.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.2.11.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.11.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EE.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EE.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.52NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.52NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBF.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.9NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EP.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.15.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.15.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCBNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCBNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.15.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.15.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.8.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-17723.5South Korea
CM.8.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
A.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.422NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.422NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.6NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.56NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.56NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.4.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.4.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.198NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.198NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used