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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XHNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.355NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.355NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.34.1.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.34.1.1 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.71 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.71 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.33.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.33.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.52NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.52NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.465NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.465NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.160.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.160.33NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.4.2.5 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.4.2.5 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XFNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XFNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
S.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
S.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.221.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.221.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.252NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.252NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.223NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.223NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.640.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.640.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.11 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.11 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.428NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.428NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.12NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.21NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.122.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.122.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.79 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.79 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-1923.32South Korea
AQ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AQ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BL.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BL.1.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BS.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BS.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BF.7.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used