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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.27NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.43.9 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.43.9 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XUNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XUNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KB.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KB.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GK.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.11NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CJ.1.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CJ.1.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XANNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XANNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BN.1.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.4.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CS.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.83NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.83NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BJ.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XDGNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XDGNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
KD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XCSNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XCSNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GA.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.7.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.15.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.15.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
BA.2.40NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CR.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CR.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HU.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HU.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
JB.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JB.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.55NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.55NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
HH.8.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HH.8.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.19NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FM.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used