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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.1.1.13NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EF.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EF.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XPNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XPNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DN.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BE.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.15NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XLNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XLNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.87 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.87 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.23.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.23.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XNNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XNNWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.111 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.111 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BM.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.1.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.31NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.30NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CG.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.1.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.1.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.70NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.70NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.63NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.63NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.4.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.8.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.8.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
EC.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EC.1.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.5.2.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.2.33NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BA.2.46NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.46NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.58 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used