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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.79NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19760.5South Korea
GG.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GG.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FL.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.3.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CK.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CK.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.34NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.34NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GD.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.65NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.65NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.10NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.10NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.38NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.38NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DT.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DT.3NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
DS.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DS.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.79NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.79NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.14NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
FD.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CM.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.7NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.25.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.25.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.13.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBC.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.4NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
GC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GC.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.5.40NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.40NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.5NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
XBB.1.32NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.32NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
BQ.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.2.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
CV.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used