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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.603NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.70NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.70NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.606NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.606NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.46 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.46 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.99 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.99 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.120.2 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.120.2 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.528NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.528NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.1.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
AY.91 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.91 (Delta)NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.585NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.585NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.351NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.351NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.36.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.8NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.1.243NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.243NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
R.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
R.2NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
W.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
W.1NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.565NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.565NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.361NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.361NWon-NGTTGCGACTACGTGATGAGG20552884928830R-19194.1South Korea
B.1.1.101NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.101NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.478NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.478NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.177.86NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.86NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.543NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.543NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.139NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.139NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
C.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.31NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.221NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.221NWon-NGTTGCGACTACGTGATGAGG20552884928830R-23088.1South Korea
B.1.362NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used