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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.258.14EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.17.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FL.17.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.23EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.23EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.562EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.562EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.219EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.219EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
N.8EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
N.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BG.6EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BG.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.20.1 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.20.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XVEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XVEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.38.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BF.38.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.4.1.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.4.1.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.513EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.513EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.338EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.338EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.284EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.284EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.9.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.9.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.498EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.498EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.184EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.184EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.499.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.499.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.38EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.38EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.116EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.116EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.134EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.134EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.393EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.393EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.434EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.434EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.4.5EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.4.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.181EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.181EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.6.6EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used