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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.125.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.78 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.78 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.159EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.159EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.43.5 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.43.5 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBC.1.6.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
XBC.1.6.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.422EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.422EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.6EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.56EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.56EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.4.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.4.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.198EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.198EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.120.2.1 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.120.2.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.416.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.416.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.532EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.532EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.408EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.408EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XHEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XHEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.355EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.355EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.34.1.1 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.34.1.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.71 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.71 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.33.2 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.33.2 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.52EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.177.52EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.465EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.465EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.209EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.209EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.236EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.236EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.33EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BA.2.33EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XQEWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
XQEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.59EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used