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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.24EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FL.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FU.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FU.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GS.8EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
GS.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GE.1.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
GE.1.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.5.93EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XBB.1.5.93EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.2.3.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FL.2.3.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.4.8EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FL.4.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EG.5.1.18EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
EG.5.1.18EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.1.5.15EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XBB.1.5.15EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.2.3.6EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XBB.2.3.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EG.2EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
EG.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EU.1.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
EU.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.2.3.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
XBB.2.3.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.4.11EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FL.4.11EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
DY.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
DY.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.7.14.5EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
BF.7.14.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.3.3EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
FL.3.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
DY.1.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-18253.7South Korea
DY.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HH.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
HH.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EM.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-15016.3South Korea
EM.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.293EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.293EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.225EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.225EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.637EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-3870.9South Korea
B.1.637EWon-ECACACAATCGATGCGCAGTA20502636526346R-1935.15South Korea
AY.39 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AY.39 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.26 (Delta)EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used