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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.110.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.180EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.180EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.155EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.155EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.92EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.92EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.145EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.145EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.120EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.120EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.417EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.417EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AM.1EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
AM.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.258.20EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.258.20EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.36.37EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.36.37EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.319EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.319EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.557EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.557EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.119EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.119EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.160EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.160EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
D.4EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
D.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.447EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.447EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
N.7EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
N.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.515EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.515EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.287EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.287EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.431EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.431EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
C.12EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
C.12EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.170EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.170EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.410EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.410EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.411EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.411EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.109EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
B.1.1.109EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.361EWon-ETTCGGAAGAGACAGGTACGTT2147.622625926279F-22650South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used